Meth2BigWig

BatMeth2: An Integrated Package for Bisulfite DNA Methylation Data Analysis with Indel-sensitive Mapping.

methratio2bw

• The methratio file calculated by calmeth, the format is chrom pos strand context nC nCover methlevel.

For exsample: chr1 34 - CHG 2 14 0.142857

For bigWig with strand information

python batmeth2_to_bigwig.py -sort -strand genome.fa.fai prefix.methratio.txt
# genome.fa.fai can be prepared by `samtools faidx genome.fa`

or for bigWig without strand information

python batmeth2_to_bigwig.py -sort genome.fa.fai prefix.methratio.txt

Run BatMeth2 to see information on usage.

Tip

For feature requests or bug reports please open an issue on github.