Requirements
gsl library
The GSL library may need to be installed when the following problems occur during the installation process.
You can download here:
fatal error: gsl/gsl_matrix_double.h : No such file or directory
./configure --prefix=/disk1/glli/tools/gsl-2.4/
make
make install
Add environment variables to ~/.bashrc
export C_INCLUDE_PATH=$C_INCLUDE_PATH:~/software/gsl-2.4/include
export CPLUS_INCLUDE_PATH=$CPLUS_INCLUDE_PATH:~/software/gsl-2.4/include
export LD_LIBRARY_PATH=$LD_LIBRARY_PATH::~/software/gsl-2.4/lib
export LIBRARY_PATH=$LIBRARY_PATH::~/software/gsl-2.4/lib
And then:
$ source ~/.bash
zlib library
The GSL library may need to be installed when the following problems occur during the installation process.
unfound zlib.h
./configure --prefix=/disk1/glli/tools/zlib-1.2.11/
make
make install
Add environment variables to ~/.bashrc
export C_INCLUDE_PATH=$C_INCLUDE_PATH:/disk1/glli/tools/zlib-1.2.11/include
export CPLUS_INCLUDE_PATH=$CPLUS_INCLUDE_PATH:/disk1/glli/tools/zlib-1.2.11/include
export LD_LIBRARY_PATH=$LD_LIBRARY_PATH::/disk1/glli/tools/zlib-1.2.11/lib
export LIBRARY_PATH=$LIBRARY_PATH::/disk1/glli/tools/zlib-1.2.11/lib
And then:
$ source ~/.bash
SAMtools
fastp
fastp, raw reads as input need.
Tip
For feature requests or bug reports please open an issue on github.