Build index

BatMeth2: An Integrated Package for Bisulfite DNA Methylation Data Analysis with Indel-sensitive Mapping.

Genome index

• Have a fasta-formatted reference file ready, and then make the neccessary pairing data-structure based on FM-index.

For WGBS type

BatMeth2 index -g genome.fa

or for RRBS

BatMeth2 index_rrbs -g genome.fa

Run BatMeth2 to see information on usage.

Tip

For feature requests or bug reports please open an issue on github.